The Biocyc Pathway/Genome databases contain all the information necessary to perform steady-state models of metabolism such as Flux Balance Analysis (FBA) and Minimization of Metabolic Adjustment (MOMA). The following models were generated from the open Pathway/Genome databases.

View details:

• Vibrio-cholerae-N16961 html xml
• Agrobacterium-tumefaciens-C58 html xml
• Heliobacter-pylori-26685 html xml
• Mycobacterium-tuberculosis-H37Rv html xml
• Mycobacterium-tuberculosis-CDC1551 html xml
• Pseudomonas-aeruginosa-PAO1 html xml

Reference:

D. Segre, J. Zucker, J. Katz, X. Lin, P. D'haeseleer, W. Rindone, P. Kharchenko, D. Nguyen, M. Wright, G. Church
"From annotated genomes to metabolic flux models and kinetic parameter fitting,"
OMICS 7:3 301-317 2003

P. Karp, S. Paley, and P. Romero
"The Pathway Tools Software,"
Bioinformatics 18:S225-32 2002

Tool:

SBML generated by biocyc2sbml.lisp version 1.17 on October 22, 2003

Downloads:

zipped SBML files

Compiled by:

Jeremy Zucker