SBML model for Mycobacterium-tuberculosis-H37Rv
Citations
D. Segre, J. Zucker, J. Katz, X. Lin, P. D'haeseleer, W. Rindone, P. Kharchenko, D. Nguyen, M. Wright, G. Church
"From annotated genomes to metabolic flux models and kinetic parameter fitting,"
OMICS 7:3 301-317 2003
P. Karp, S. Paley, and P. Romero
"The Pathway Tools Software,"
Bioinformatics 18:S225-32 2002
Description
The MTBRV model was generated from the Organism-specific Pathway/Genome database
Reaction Reaction Equation
EC# 3.6.1.34H+[cytoplasm] + H2O + ATP =H+[periplasm] + phosphate + ADP
RXN0-743N5-carboxyaminoimidazole ribonucleotide = phosphoribosyl-carboxy-aminoimidazole
RXN0-7425'-phosphoribosyl-5-aminoimidazole + ATP + H2O + CO2 = N5-carboxyaminoimidazole ribonucleotide + ADP + phosphate
RXN1F-93dihydrokaempferol = kaempferol
RXN-527dihydroquercetin + NADH = quercetin + NAD
RXN1F-462quercetin + UDP-D-glucose = quercetin-3-glucoside + UDP
RXN-1541naringenin = isoflavone
RXN1G-186MSR + H2O = GlcN-Ins + AcCySR
RXN1G-129MSCH2OH + NAD + H2O -> formate + NADH + H + mycothiol
RXN1G-126mycothiol + formaldehyde = MSCH2OH
RXN1G-4Cys-GlcN-Ins + acetyl-CoA = mycothiol + Coenzyme A
COBINAMIDEKIN-RXNadenosylcobinamide + ATP = adenosylcobinamide-P + ADP
EC# 1.1.1.-acetoacetyl-CoA + NADH = 3-hydroxybutyryl-CoA + NAD
DMK-RXN1,4-dihydroxy-2-naphthoate + polyprenylpyrophosphate = demethylmenaquinone + pyrophosphate + CO2
SHCHCSYNTH-RXNisochorismate + succinate-semialdehyde-thiamine PPi = 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate + pyruvate + CO2
GLYCOPHOSPHORYL-RXNGlycogens + phosphate = maltodextrin + glucose-1-phosphate
QUINOLINATE-SYNTHE-MULTI-RXNL-aspartate + O2 + dihydroxy-acetone-phosphate = quinolinate + phosphate + H2O2 + 2 H2O
EC# 2.-.-.-adenosylcobinamide-GDP + α-ribazole = adenosylcobalamin + GMP
R346-RXN1-amino-propan-2-ol + adenosyl-cobyric acid = adenosylcobinamide
ADOMET-DMK-METHYLTRANSFER-RXNdemethylmenaquinone + S-adenosyl-L-methionine = menaquinone + S-adenosyl-homocysteine
COBINPGUANYLYLTRANS-RXNadenosylcobinamide-P + GTP = adenosylcobinamide-GDP + pyrophosphate
PYRIMSYN1-RXN5'-phosphoribosyl-5-aminoimidazole = 4-amino-5-hydroxymethyl-2-methylpyrimidine-phosphate
EC# 1.1.1.-acetaldehyde + NADH = ethanol + NAD
O-SUCCINYLBENZOATE-COA-SYN-RXN2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate = O-succinylbenzoate + H2O
MALTET-RXNmaltotetraose + H2O = maltotriose + β-D-glucose
MALDEXPHOSPHORYL-RXNmaltodextrin + phosphate = maltotetraose + glucose-1-phosphate
GLYMALTOPHOSPHORYL-RXNGlycogens + phosphate = maltotetraose + glucose-1-phosphate
EC# 2.7.-.-adenosylcobinamide + ATP = adenosylcobinamide-P + ADP
EC# 1.-.-.-cob(II)yrinic acid a,c-diamide + NADH = cob(I)yrinic acid a,c-diamide + NAD
R342-RXNhydrogenobyrinate a,c-diamide + Co2+ + ATP = cob(II)yrinic acid a,c-diamide + ADP + phosphate
EC# 1.-.-.-precorrin-3A = precorrin-3B
HYPXPRIBOSYLTRAN-RXNhypoxanthine + PRPP = pyrophosphate + IMP
EC# 2.4.2.-inosine + phosphate = ribose-1-phosphate + hypoxanthine
DEOXYINOPHOSPHOR-RXNhypoxanthine + deoxy-ribose-1-phosphate = deoxyinosine + phosphate
ADDALT-RXNNH3 + deoxyinosine = H2O + deoxyadenosine
EC# 2.4.2.-ribose-1-phosphate + adenine = adenosine + phosphate
DEOXYADENPHOSPHOR-RXNdeoxyadenosine + phosphate = adenine + deoxy-ribose-1-phosphate
PDXJ-RXN1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate
PNPOXI-RXNO2 + pyridoxine-5'-phosphate = H2O2 + pyridoxal 5'-phosphate
PDXA-RXNphospho-hydroxy-threonine + NAD = 1-amino-propan-2-one-3-phosphate + NADH + CO2
DIMETHUROPORDEHYDROG-RXNdihydrosirohydrochlorin + NAD = sirohydrochlorin + NADH
alpha-ketoglutarate oxidative decarboxylation2-oxoglutarate + Coenzyme A + NAD = succinyl-CoA + CO2 + NADH + H+
PYRUVDEH-RXNpyruvate + Coenzyme A + NAD = acetyl-CoA + CO2 + NADH + H+
ACONITATEHYDR-RXNcis-aconitate + H2O = isocitrate
PHOSNACMURPENTATRANS-RXNundecaprenyl phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate- D-alanyl-D-alanine = N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptane- D-alanyl-D-alanine-diphosphoundecaprenol + UMP
EC# 2.7.1.-cytidine + GTP = CMP + GDP
2KETO-3METHYLVALERATE-RXN2-keto-3-methyl-valerate + NAD + Coenzyme A = 2-methylbutyryl-CoA + NADH + CO2
DALADEHYDROG-RXND-alanine + H2O = pyruvate + NH3
2TRANSKETO-RXNerythrose-4-phosphate + xylulose-5-phosphate = fructose-6-phosphate + glyceraldehyde-3-phosphate
EC# 5.-.-.-GDP-4-dehydro-6-deoxy-D-mannose = GDP-4-dehydro-6-L-deoxygalactose
EC# 1.-.-.-GDP-4-dehydro-6-L-deoxygalactose + NADPH + H+ = guanosine diphosphate fucose + NADP
R41-RXN5-methyl-THF + B12-E = THF + methyl-B12-E
R42-RXNcarbon monoxide + Coenzyme A + methyl-B12-E = acetyl-CoA + B12-E
GDPMANMANHYDRO-RXNGDP-mannose + H2O = GDP + mannose
PHOSGLUCOSAMINEMUT-RXND-glucosamine-6-phosphate = glucosamine-1P
GLUCOSAMINE1PACETYL-RXNglucosamine-1P + acetyl-CoA = N-acetyl-glucosamine-1-phosphate + Coenzyme A
PROPIONYL-COA-CARBOXYLASE-RXNpropionyl-CoA + H2O + ATP + CO2 = D-methylmalonyl-CoA + phosphate + ADP
ALPHA-KETOBUTYRATE-DEHYDROG-RXN2-oxobutanoate + Coenzyme A + NAD = propionyl-CoA + CO2 + NADH
CYSTATHIONASE-RXNcystathionine + H2O = L-cysteine + homoserine
URA-PHOSPH-RXNphosphate + Deoxyuridine = deoxy-ribose-1-phosphate + uracil
AMACETOXID-RXNaminoacetone + H2O + O2 = methyl-glyoxal + NH3 + H2O2
THREOSPON-RXN2-amino-3-oxobutanoate = aminoacetone + CO2
METBALT-RXN2-oxobutanoate + succinate + NH3 = O-succinyl-L-homoserine + H2O
HOMOSERDEAM-RXN2-oxobutanoate + NH3 = homoserine
GCVMULTI-RXNL-glycine + THF + NAD = NH3 + CO2 + 5,10-methylene-THF + NADH + H+
FORMYLTHFGLUSYNTH-RXN10-formyl-THF(glu)n + L-glutamate + ATP = 10-formyl-THF(glu)n+1 + ADP + phosphate
SPONTPRO-RXNL-glutamate γ-semialdehyde = H2O + L-Δ1-pyrroline-5-carboxylate
DURIDKI-RXNDeoxyuridine + ATP = dUMP + ADP
RIBOFLAVINSYNDEAM-RXNH2O + 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine = NH3 + 5-amino-6-(ribosylamino)-2,4-(1H,3H)-pyrimidinedione 5'-phosphate
RIBOFLAVINSYNREDUC-RXNNADPH + H+ + 5-amino-6-(ribosylamino)-2,4-(1H,3H)-pyrimidinedione 5'-phosphate = NADP + 5-amino-2,6-dioxy-4-(5'-phosphoribitylamino)pyrimidine
DIOHBUTANONEPSYN-RXNribulose-5-phosphate = 3,4-dihydroxy-2-butanone-4-P + formate
RIBOPHOSPHAT-RXN5-amino-2,6-dioxy-4-(5'-phosphoribitylamino)pyrimidine + H2O = 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione + phosphate
LUMAZINESYN-RXN3,4-dihydroxy-2-butanone-4-P + 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione = 6,7-dimethyl-8-(1-D-ribityl)lumazine + phosphate
LINBBSPON-RXN2,4,5-trichloro-2,5-cyclohexadiene-1-ol = 2,5-dichlorophenol + HCl
LINABSPON-RXN1,3,4,6-tetrachloro-1,4-cyclohexadiene = HCl + 1,2,4-trichlorobenzene
LINE-RXNchlorohydroquinone + O2 + H2O = maleylacetate + HCl
LIND-RXN2,5-dichlorohydroquinone + 2 reduced glutathione = chlorohydroquinone + oxidized glutathione + HCl
EC# 1.1.-.-2,5-dichloro-2,5-cyclohexadiene-1,4-diol + NAD = 2,5-dichlorohydroquinone + NADH + H+
QUINOLINATE-SYNTHA-RXNiminoaspartate + dihydroxy-acetone-phosphate = quinolinate + 2 H2O + phosphate
UPPSYN-RXNcis,trans-polyisoprenyln-PP + Δ3-isopentenyl-PP = pyrophosphate + cis,trans-polyisoprenyln+1-PP
GDPPYPHOSKIN-RXNATP + GDP = AMP + guanosine 5'-diphosphate,3'-diphosphate
lactate oxidationFMN + lactate = FMNH2 + pyruvate
PYRAMKIN-RXNATP + pyridoxamine = ADP + pyridoxamine 5'-phosphate
THTOREDUCT-RXNtetrahydrothiophene 1-oxide + reduced acceptor = tetrahydrothiophene + acceptor
ENTMULTI-RXN6 ATP + 3 L-serine + 3 2,3-dihydroxybenzoate = 6 pyrophosphate + 6 AMP + enterobactin
FHLMULTI-RXNformate = CO2 + H2
EC# 1.8.1.-PAPS + NADPH = SO3 + adenosine 3',5'-bisphosphate + NADP
RXN1G-2GlcNAc-Ins = GlcN-Ins + acetate
RXN1G-121GlcN-Ins + ATP + L-cysteine = Cys-GlcN-Ins + ADP
RXN1G-6mycothiol + O = MSSM + H2O
RXN1G-7MSSM + NADPH = mycothiol + NADP
RXN1G-0mycothiol + RX = HX + MSR
EC# 6.2.1.3Coenzyme A + a fatty acid + ATP = acyl-CoA + pyrophosphate + AMP
EC# 6.2.1.3octanoate + ATP + Coenzyme A = octanoyl-CoA + AMP + pyrophosphate
EC# 6.2.1.12Coenzyme A + 4-coumarate + ATP = coumaroyl-CoA + pyrophosphate + AMP
EC# 6.2.1.26ATP + O-succinylbenzoate + Coenzyme A = AMP + pyrophosphate + O-succinylbenzoyl-CoA
EC# 6.2.1.5succinyl-CoA + ADP + phosphate = succinate + Coenzyme A + ATP
EC# 6.2.1.1Coenzyme A + acetate + ATP = acetyl-CoA + pyrophosphate + AMP
EC# 6.2.1.9Coenzyme A + malate + ATP = phosphate + (3S)-3-Carboxy-3-hydroxypropanoyl-CoA + ADP
EC# 6.3.1.2NH3 + L-glutamate + ATP = L-glutamine + ADP + phosphate
EC# 6.3.1.1NH3 + L-aspartate + ATP = L-asparagine + pyrophosphate + AMP
EC# 6.3.1.5ATP + deamido-NAD + NH3 = AMP + pyrophosphate + NAD
EC# 6.3.2.2L-cysteine + L-glutamate + ATP = L-γ-glutamylcysteine + phosphate + ADP
EC# 6.3.2.1β-alanine + L-pantoate + ATP = pantothenate + pyrophosphate + AMP
EC# 6.3.2.13UDP-N-acetylmuramoyl-L-alanyl-D-glutamate + meso-diaminopimelate + ATP = UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + phosphate + ADP
EC# 6.3.2.15D-alanyl-D-alanine + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + ATP = UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate- D-alanyl-D-alanine + phosphate + ADP
EC# 6.3.2.9UDP-N-acetylmuramoyl-L-alanine + D-glutamate + ATP = UDP-N-acetylmuramoyl-L-alanyl-D-glutamate + phosphate + ADP
EC# 6.3.2.8L-alanine + UDP-N-acetylmuramate + ATP = UDP-N-acetylmuramoyl-L-alanine + phosphate + ADP
EC# 6.3.2.6ATP + phosphoribosyl-carboxy-aminoimidazole + L-aspartate = ADP + phosphate + 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
EC# 6.3.2.17L-glutamate + H4PteGlu(n+1) + ATP = H4PteGlu(n) + phosphate + ADP
EC# 6.3.2.4D-alanine + D-alanine + ATP = D-alanyl-D-alanine + phosphate + ADP
EC# 6.3.2.3L-glycine + L-γ-glutamylcysteine + ATP = reduced glutathione + phosphate + ADP
EC# 6.3.2.54'-phosphopantothenate + L-cysteine + CTP = pyrophosphate + CMP + 4'-phospho-N-pantothenoylcysteine
EC# 6.3.2.12L-glutamate + 7,8-dihydropteroate + ATP = 7,8-dihydrofolate + phosphate + ADP
EC# 6.3.3.3CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP
EC# 6.3.3.1ATP + 5-phosphoribosyl-n-formylglycineamidine = ADP + phosphate + 5'-phosphoribosyl-5-aminoimidazole
EC# 6.3.4.2L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate
EC# 6.3.4.4L-aspartate + IMP + GTP = adenylo-succinate + phosphate + GDP
EC# 6.3.4.13ATP + 5-phosphoribosylamine + L-glycine = ADP + phosphate + 5-phospho-ribosyl-glycineamide
EC# 6.3.4.5L-aspartate + citrulline + ATP = L-arginino-succinate + pyrophosphate + AMP
EC# 6.3.4.1xanthosine-5-phosphate + ATP + NH3 = AMP + pyrophosphate + GMP
EC# 6.3.4.3ATP + formate + THF = ADP + phosphate + 10-formyl-THF
EC# 6.3.4.16H2O + CO2 + NH3 + 2 ATP = phosphate + carbamoyl-phosphate + 2 ADP
EC# 6.3.5.2xanthosine-5-phosphate + H2O + L-glutamine + ATP = L-glutamate + GMP + pyrophosphate + AMP
EC# 6.3.5.-adenosyl-cobyrinic acid a,c-diamide + 4 L-glutamine + 4 ATP + 4 H2O = adenosyl-cobyric acid + 4 L-glutamate + 4 ADP + 4 phosphate
EC# 6.3.5.3ATP + 5'-phosphoribosyl-N-formylglycineamide + L-glutamine + H2O = ADP + phosphate + 5-phosphoribosyl-n-formylglycineamidine + L-glutamate
EC# 6.3.5.5H2O + HCO3- + L-glutamine + 2 ATP + H+ = carbamoyl-phosphate + L-glutamate + phosphate + 2 ADP
EC# 6.3.5.-hydrogenobyrinate + 2 L-glutamine + 2 ATP + 2 H2O = hydrogenobyrinate a,c-diamide + 2 L-glutamate + 2 ADP + 2 phosphate
EC# 6.3.5.4H2O + L-glutamine + L-aspartate + ATP = L-glutamate + L-asparagine + pyrophosphate + AMP
EC# 6.3.5.1ATP + deamido-NAD + L-glutamine + H2O = AMP + pyrophosphate + NAD + L-glutamate
EC# 6.4.1.3ATP + HCO3- + propionyl-CoA = ADP + phosphate + D-methylmalonyl-CoA
EC# 6.4.1.1HCO3- + pyruvate + ATP = phosphate + oxaloacetic acid + ADP
EC# 6.4.1.2HCO3- + H+ + acetyl-CoA + ATP = malonyl-CoA + phosphate + ADP
EC# 6.5.1.2(DEOXYRIBONUCLEOTIDE)(M) + (DEOXYRIBONUCLEOTIDE)(N) + NAD = (DEOXYRIBONUCLEOTIDE)(N+M) + nicotinamide nucleotide + AMP
EC# 5.-.-.-N-acetyl-D-mannosamine-6-phosphate = N-acetyl-D-glucosamine-6-phosphate
EC# 5.5.1.6naringenin chalcone = naringenin
EC# 5.5.1.23-Carboxy-cis,cis-muconate = 2-Carboxy-2,5-dihydro-5-oxofuran-2-acetate
EC# 5.5.1.1cis,cis-muconate = 2,5-Dihydro-5-oxofuran-2-acetate
EC# 5.1.1.1L-alanine = D-alanine
EC# 5.1.1.7ll-diaminopimelate = meso-diaminopimelate
EC# 5.1.1.3L-glutamate = D-glutamate
EC# 5.1.2.3D-3-hydroxyacyl-CoA = L-3-hydroxyacyl-CoA
EC# 5.1.3.13dTDP-4-dehydro-6-deoxy-D-glucose = dTDP-4-dehydro-6-deoxy-L-mannose
EC# 5.1.3.1ribulose-5-phosphate = xylulose-5-phosphate
EC# 5.1.3.2UDP-D-glucose = UDP-galactose
EC# 5.1.3.14UDP-N-acetyl-D-glucosamine = UDP-N-acetyl-D-mannosamine
EC# 5.1.99.1D-methylmalonyl-CoA = L-methylmalonyl-CoA
EC# 5.1.99.4(2S)-2-METHYLACYL-COA = (2R)-2-METHYLACYL-COA
EC# 5.2.1.8PEPTIDYLPROLINE (OMEGA=180) = PEPTIDYLPROLINE (OMEGA=0)
EC# 5.3.1.16phosphoribosylformiminoAICAR-phosphate = phosphoribulosylformimino-AICAR-P
EC# 5.3.1.1dihydroxy-acetone-phosphate = glyceraldehyde-3-phosphate
EC# 5.3.1.9glucose-6-phosphate = fructose-6-phosphate
EC# 5.3.1.8mannose-6-phosphate = fructose-6-phosphate
EC# 5.3.1.6ribose-5-phosphate = ribulose-5-phosphate
EC# 5.3.1.5β-D-glucose = fructose
EC# 5.3.1.24N-(5'-phosphoribosyl)-anthranilate = 1-(o-carboxyphenylamino)-1'-deoxyribulose-5'-phosphate
EC# 5.3.3.8cis-Δ3-enoyl-CoA = trans-Δ2-enoyl-CoA
EC# 5.3.3.2Δ3-isopentenyl-PP = dimethylallyl-pyrophosphate
EC# 5.3.3.42,5-Dihydro-5-oxofuran-2-acetate = 3-oxoadipate-enol-lactone
EC# 5.4.1.2precorrin-8x = hydrogenobyrinate
EC# 5.4.2.2glucose-1-phosphate = glucose-6-phosphate
EC# 5.4.2.6β-D-Glucose 1-phosphate = β-D-Glucose 6-phosphate
EC# 5.4.2.8mannose-6-phosphate = mannose-1-phosphate
EC# 5.4.2.13-phosphoglycerate = 2-phosphoglycerate
EC# 5.4.2.7deoxy-ribose-1-phosphate = deoxyribose-5-phosphate
EC# 5.4.2.7ribose-1-phosphate = ribose-5-phosphate
EC# 5.4.3.8glutamate-1-semialdehyde = 5-amino-levulinate
EC# 5.4.99.9UDP-galactose = UDP-D-galacto-1,4-furanose
EC# 5.4.99.6chorismate = isochorismate
EC# 5.4.99.2L-methylmalonyl-CoA = succinyl-CoA
EC# 5.4.99.154-{(1,4)-alpha-D-glucosyl}(N-1)-D-glucose = 1-alpha-D-{(1,4)-alpha-D-glucosyl}(N-1)-alpha-D-glucopyranoside
EC# 5.4.99.5chorismate = prephenate
EC# 4.-.-.-4-amino-4-deoxychorismate = p-aminobenzoate + pyruvate
EC# 4.1.3.122-keto-isovalerate + acetyl-CoA + H2O = 3-carboxy-3-hydroxy-isocaproate + Coenzyme A
EC# 4.1.3.18pyruvate + 2-oxobutanoate = 2-aceto-2-hydroxy-butyrate + CO2
EC# 4.1.3.182 pyruvate = 2-aceto-lactate + CO2
EC# 4.1.3.6citrate = acetate + oxaloacetic acid
EC# 4.1.3.1isocitrate = glyoxylate + succinate
EC# 4.1.3.27chorismate + L-glutamine = anthranilate + pyruvate + L-glutamate
EC# 4.1.3.-L-glutamine + chorismate = 4-amino-4-deoxychorismate + L-glutamate
EC# 4.1.3.36O-succinylbenzoyl-CoA = Coenzyme A + 1,4-dihydroxy-2-naphthoate
EC# 4.1.3.7oxaloacetic acid + acetyl-CoA + H2O = citrate + Coenzyme A
EC# 4.1.3.2acetyl-CoA + H2O + glyoxylate = malate + Coenzyme A
DXS-RXNpyruvate + glyceraldehyde-3-phosphate = CO2 + deoxyxylulose-5-phosphate
EC# 4.1.3.-4-hydroxy-2-ketovalerate = acetaldehyde + pyruvate
EC# 4.1.3.24(3S)-3-Carboxy-3-hydroxypropanoyl-CoA = glyoxylate + acetyl-CoA
EC# 4.1.3.3N-acetylneuraminate = N-acetylmannosamine + pyruvate
EC# 4.1.3.16D-4-hydroxy-2-keto-glutarate = glyoxylate + pyruvate
EC# 4.1.1.-L-methylmalonyl-CoA = propionyl-CoA + CO2
EC# 4.1.1.15L-glutamate = CO2 + 4-aminobutyrate
EC# 4.1.1.215'-phosphoribosyl-5-aminoimidazole + ATP + CO2 + H2O = phosphate + phosphoribosyl-carboxy-aminoimidazole + ADP
EC# 4.1.1.37uroporphyrinogen-III = 4 CO2 + coproporphyrinogen III
EC# 4.1.1.481-(o-carboxyphenylamino)-1'-deoxyribulose-5'-phosphate = indole-3-glycerol-phosphate + CO2 + H2O
EC# 4.1.1.8oxalyl-CoA = CO2 + formyl-CoA
EC# 4.1.1.23orotidine-5'-phosphate = CO2 + UMP
EC# 4.1.1.65L-1-phosphatidylserine = L-1-phosphatidyl-ethanolamine + CO2
EC# 4.1.1.20meso-diaminopimelate = CO2 + L-lysine
EC# 4.1.1.11L-aspartate = β-alanine + CO2
EC# 4.1.1.4acetoacetate = CO2 + acetone
EC# 4.1.1.712-oxoglutarate + thiamine-pyrophosphate = CO2 + succinate-semialdehyde-thiamine PPi
EC# 4.1.1.32oxaloacetic acid + GTP = CO2 + phosphoenolpyruvate + GDP
EC# 4.1.1.31phosphoenolpyruvate + H2O + CO2 = phosphate + oxaloacetic acid
EC# 4.1.1.364'-phospho-N-pantothenoylcysteine = pantetheine 4'-phosphate + CO2
EC# 4.1.1.18L-lysine = CO2 + cadaverine
EC# 4.1.1.49oxaloacetic acid + ATP = CO2 + phosphoenolpyruvate + ADP
EC# 4.1.1.17L-ornithine = CO2 + putrescine
EC# 4.1.1.19L-arginine = CO2 + agmatine
EC# 4.1.1.442-Carboxy-2,5-dihydro-5-oxofuran-2-acetate = CO2 + 3-oxoadipate-enol-lactone
EC# 4.1.1.41D-methylmalonyl-CoA = CO2 + propionyl-CoA
EC# 4.1.1.74Indolepyruvate = CO2 + indole acetaldehyde
EC# 4.1.1.50S-adenosyl-L-methionine = CO2 + S-adenosylmethioninamine
EC# 4.1.2.13fructose-1,6-bisphosphate = dihydroxy-acetone-phosphate + glyceraldehyde-3-phosphate
EC# 4.1.2.4deoxyribose-5-phosphate = acetaldehyde + glyceraldehyde-3-phosphate
EC# 4.1.2.15phosphoenolpyruvate + erythrose-4-phosphate + H2O = 3-deoxy-D-arabino-heptulosonate-7-phosphate + phosphate
EC# 4.1.2.25dihydro-neo-pterin = glycolaldehyde + 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine
EC# 4.1.2.9phosphate + xylulose-5-phosphate = H2O + glyceraldehyde-3-phosphate + acetylphosphate
EC# 4.2.1.51prephenate = phenylpyruvate + H2O + CO2
EC# 4.2.1.46dTDP-D-glucose = H2O + dTDP-4-dehydro-6-deoxy-D-glucose
EC# 4.2.1.173-hydroxybutyryl-CoA = crotonyl-CoA + H2O
EC# 4.2.1.17H2O + trans-Δ2-enoyl-CoA = L-3-hydroxyacyl-CoA
EC# 4.2.1.17tiglyl-CoA + H2O = 2-methyl-3-hydroxybutyryl-CoA
EC# 4.2.1.17methacrylyl-CoA + H2O = 3-hydroxy-isobutyryl-CoA
EC# 4.2.1.70ribose-5-phosphate + uracil = H2O + pseudouridine 5'-phosphate
EC# 4.2.1.333-carboxy-3-hydroxy-isocaproate = 2-D-threo-hydroxy-3-carboxy-isocaproate
EC# 4.2.1.52pyruvate + L-aspartate-semialdehyde = 2 H2O + 2,3-dihydrodipicolinate
EC# 4.2.1.20indole-3-glycerol-phosphate + L-serine = L-tryptophan + H2O + glyceraldehyde-3-phosphate
EC# 4.2.1.19D-erythro-imidazole-glycerol-phosphate = imidazole acetol-phosphate + H2O
EC# 4.2.1.3citrate = cis-aconitate + H2O
EC# 4.2.1.112-phosphoglycerate = phosphoenolpyruvate + H2O
EC# 4.2.1.13L-serine + H2O = pyruvate + NH3 + H2O
EC# 4.2.1.92,3-dihydroxy-3-methylvalerate = 2-keto-3-methyl-valerate + H2O
EC# 4.2.1.242 5-amino-levulinate = 2 H2O + porphobilinogen
EC# 4.2.1.22homocysteine + L-serine = H2O + cystathionine
EC# 4.2.1.2malate = fumarate + H2O
EC# 4.2.1.47GDP-mannose = H2O + GDP-4-dehydro-6-deoxy-D-mannose
EC# 4.2.1.16L-threonine + H2O = 2-oxobutanoate + H2O + NH3
EC# 4.2.1.103-dehydroquinate = H2O + 3-dehydro-shikimate
EC# 4.2.1.1H2O + CO2 = H2CO3
EC# 4.2.1.553-hydroxybutyryl-CoA = H2O + crotonyl-CoA
EC# 4.2.1.75hydroxymethylbilane = H2O + uroporphyrinogen-III
EC# 4.2.1.92,3-dihydroxy-isovalerate = 2-keto-isovalerate + H2O
EC# 4.2.99.10methanethiol + O-Acetyl-L-homoserine = acetate + L-methionine
EC# 4.2.99.9L-cysteine + O-succinyl-L-homoserine = succinate + cystathionine
EC# 4.2.99.8O-acetyl-L-serine + H2S = L-cysteine + acetate
EC# 4.2.99.-L-cysteine + O-phospho-L-homoserine = cystathionine + phosphate
EC# 4.2.99.-O-Acetyl-L-homoserine + H2S = homocysteine + acetate
EC# 4.2.99.2O-phospho-L-homoserine + H2O = phosphate + L-threonine
EC# 4.6.1.33-deoxy-D-arabino-heptulosonate-7-phosphate = phosphate + 3-dehydroquinate
EC# 4.6.1.45-enolpyruvyl-shikimate-3-phosphate = phosphate + chorismate
EC# 4.3.1.8H2O + 4 porphobilinogen = 4 NH3 + hydroxymethylbilane
EC# 4.3.1.1L-aspartate = fumarate + NH3
EC# 4.3.2.25'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole = fumarate + AICAR
EC# 4.3.2.1L-arginino-succinate = L-arginine + fumarate
EC# 4.3.2.2adenylo-succinate = fumarate + AMP
EC# 4.3.2.3(S)-Ureidoglycolate = urea + glyoxylate
EC# 4.3.99.1HCO3- + Cyanate = carbamate + CO2
EC# 4.4.1.-homoserine + H2O = 2-oxobutanoate + NH4+ + H2O
EC# 4.4.1.8cystathionine + H2O = pyruvate + NH3 + homocysteine
EC# 4.4.1.1cystathionine + H2O = 2-oxobutanoate + L-cysteine + NH3
EC# 4.5.1.-γ-pentachlorocyclohexane = HCl + 1,3,4,6-tetrachloro-1,4-cyclohexadiene
EC# 4.5.1.-γ-hexachlorocyclohexane = γ-pentachlorocyclohexane + HCl
EC# 4.99.1.1Fe2+ + protoporphyrin IX = 2 H+ + protoheme
EC# 4.99.1.-sirohydrochlorin + Fe2+ = siroheme + 2 H+
EC# 4.99.1.2phenylmercury acetate + H+ = Hg2+ + benzene + acetate
EC# 3.1.3.12α,α-trehalose 6-phosphate + H2O = trehalose + phosphate
EC# 3.1.3.2an orthophosphoric monoester + H2O + an orthophosphoric monoester = phosphate + an alcohol
EC# 3.1.3.33-phospho-serine + H2O = L-serine + phosphate
EC# 3.1.3.1an orthophosphoric monoester + an orthophosphoric monoester + H2O = an alcohol + phosphate
EC# 3.1.3.25H2O + 1L-myo-Inositol 1-phosphate = phosphate + myo-inositol
EC# 3.1.3.-H2O + α-ribazole-5'-P = α-ribazole + phosphate
EC# 3.1.3.11fructose-1,6-bisphosphate + H2O = fructose-6-phosphate + phosphate
EC# 3.1.3.15L-histidinol-phosphate + H2O = histidinol + phosphate
EC# 3.1.3.10H2O + glucose-1-phosphate = phosphate + β-D-glucose
EC# 3.1.3.27L-1-phosphatidylglycerol-phosphate + H2O = L-1-phosphatidyl-glycerol + phosphate
EC# 3.1.3.4H2O + L-phosphatidate = phosphate + 1,2-diacylglycerol
EC# 3.1.3.-H2O + NADP = NAD + phosphate
EC# 3.1.4.46H2O + a glycerophosphodiester = glycerol-3-phosphate + an alcohol
EC# 3.1.4.3Lecithins + phosphatidylcholine + H2O = phosphoryl-choline + 1,2-diacylglycerol
EC# 3.1.5.1H2O + deoxy-GTP = PPPi + deoxyguanosine
EC# 3.1.6.1an aromatic sulfate + H2O + an aromatic sulfate = SO42- + an aryl alcohol
EC# 3.1.7.2guanosine 5'-diphosphate,3'-diphosphate + H2O = pyrophosphate + GDP
EC# 3.1.1.1H2O + A CARBOXYLIC ESTER = an acid + an alcohol
EC# 3.1.1.24H2O + 3-oxoadipate-enol-lactone = 3-ketoadipate
EC# 3.1.1.31D-6-phospho-glucono-δ-lactone + H2O = 6-phospho-gluconate
EC# 3.1.2.-acyl-CoA + H2O = a fatty acid + Coenzyme A
EC# 3.1.2.4H2O + 3-hydroxy-isobutyryl-CoA = 3-hydroxy-isobutyrate + Coenzyme A
EC# 3.2.1.11,4-α-D-glucan = maltodextrin
EC# 3.2.1.68maltodextrin = maltotetraose
EC# 3.2.1.23H2O + lactose = β-D-galactose + β-D-glucose
EC# 3.2.2.4H2O + AMP = ribose-5-phosphate + adenine
EC# 3.2.2.1nicotinamide ribose + H2O = niacinamide + ribose
EC# 3.3.2.3H2O + AN EPOXIDE = A GLYCOL
EC# 3.3.2.1H2O + isochorismate = pyruvate + 2,3-dihydro-2,3-dihydroxybenzoate
EC# 3.3.1.1H2O + S-adenosyl-homocysteine = homocysteine + adenosine
EC# 3.5.1.25H2O + N-acetyl-D-glucosamine-6-phosphate = acetate + D-glucosamine-6-phosphate
EC# 3.5.1.31H2O + N-formyl-L-methionine = L-methionine + formate
EC# 3.5.1.18H2O + N-succinyl-LL-2,6-diaminopimelate = ll-diaminopimelate + succinate
EC# 3.5.1.5H2O + urea = 2 NH3 + CO2
EC# 3.5.1.10H2O + 10-formyl-THF = THF + formate
EC# 3.5.1.1L-asparagine + H2O = L-aspartate + NH3
EC# 3.5.1.-pyrazinamide + H2O = pyrazinoic acid + NH3
EC# 3.5.1.19niacinamide + H2O = niacine + NH3
EC# 3.5.2.3carbamoyl-L-aspartate = dihydroorotate + H2O
EC# 3.5.2.5H2O + allantoin = allantoate
EC# 3.5.2.6a β-lactam + H2O + a β-lactam = A SUBSTITUTED BETA-AMINO ACID
EC# 3.5.3.92 H2O + 2 allantoate = O2 + 2 CO2 + 2 NH3 + 2 ureidoglycine
EC# 3.5.3.6H2O + L-arginine = NH3 + citrulline
EC# 3.5.3.19H2O + (S)-Ureidoglycolate = CO2 + 2 NH3 + glyoxylate
EC# 3.5.3.4H2O + allantoate = (S)-Ureidoglycolate + urea
EC# 3.5.3.11H2O + agmatine = urea + putrescine
EC# 3.5.4.162 H2O + GTP = dihydroneopterin triphosphate + formate
EC# 3.5.4.9H2O + 5,10-methenyl-THF = 10-formyl-THF
EC# 3.5.4.5H2O + cytidine = NH3 + uridine
EC# 3.5.4.5H2O + deoxycytidine = NH3 + Deoxyuridine
EC# 3.5.4.4H2O + adenosine = NH3 + inosine
EC# 3.5.4.13H2O + dCTP = NH3 + dUTP
EC# 3.5.4.253 H2O + GTP = pyrophosphate + 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine + formate
EC# 3.5.4.19phosphoribosyl-AMP + H2O = phosphoribosylformiminoAICAR-phosphate
EC# 3.5.4.10phosphoribosyl-formamido-carboxamide = IMP + H2O
EC# 3.5.4.1H2O + cytosine = NH3 + uracil
EC# 3.5.4.26H2O + 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine = NH3 + 5-Amino-6-(5'-phosphoribosylamino)uracil
EC# 5.3.1.10H2O + D-glucosamine-6-phosphate = NH3 + fructose-6-phosphate
EC# 3.6.1.1H2O + pyrophosphate = 2 phosphate
EC# 3.6.1.36H2O + ATP = phosphate + ADP
EC# 3.6.1.26CDP-diacylglycerol + H2O = CMP + L-phosphatidate
EC# 3.6.1.23H2O + dUTP = pyrophosphate + dUMP
EC# 3.6.1.-dihydroneopterin triphosphate = dihydroneopterin phosphate + pyrophosphate
EC# 3.6.1.-dihydroneopterin phosphate = dihydro-neo-pterin + phosphate
EC# 3.6.1.31phosphoribosyl-ATP + H2O = phosphoribosyl-AMP + pyrophosphate
EC# 3.6.1.40H2O + guanosine 3'-diphosphate 5'-triphosphate = phosphate + guanosine 5'-diphosphate,3'-diphosphate
EC# 3.8.1.-1,3,4,6-tetrachloro-1,4-cyclohexadiene + H2O = 2,4,5-trichloro-2,5-cyclohexadiene-1-ol + HCl
EC# 3.8.1.-2,4,5-trichloro-2,5-cyclohexadiene-1-ol + H2O = 2,5-dichloro-2,5-cyclohexadiene-1,4-diol + HCl
EC# 2.1.1.45dUMP + 5,10-methylene-THF = dTMP + 7,8-dihydrofolate
EC# 2.1.1.79PHOSPHOLIPID OLEFINIC FATTY ACID + S-adenosyl-L-methionine = PHOSPHOLIPID CYCLOPROPANE FATTY ACID + S-adenosyl-homocysteine
EC# 2.1.1.-2 S-adenosyl-L-methionine + uroporphyrinogen-III = 2 S-adenosyl-homocysteine + dihydrosirohydrochlorin
EC# 2.1.1.14homocysteine + 5-methyltetrahydropteroyltri-L-glutamate = L-methionine + tetrahydropteroyltri-L-glutamate
EC# 2.1.1.132precorrin-6y + 2 S-adenosyl-L-methionine = CO2 + precorrin-8x + 2 S-adenosyl-homocysteine
EC# 2.1.1.-precorrin-5 + S-adenosyl-L-methionine = precorrin-6x + S-adenosyl-homocysteine
EC# 2.1.1.133precorrin-4 + S-adenosyl-L-methionine = precorrin-5 + S-adenosyl-homocysteine
EC# 2.1.1.131precorrin-3B + S-adenosyl-L-methionine = precorrin-4 + S-adenosyl-homocysteine
EC# 2.1.1.130dihydrosirohydrochlorin + S-adenosyl-L-methionine = precorrin-3A + S-adenosyl-homocysteine
EC# 2.1.1.13homocysteine + 5-methyl-THF = L-methionine + THF
EC# 2.1.2.1L-serine + THF = L-glycine + 5,10-methylene-THF + H2O
EC# 2.1.2.-5-phospho-ribosyl-glycineamide + formate + ATP = phosphate + 5'-phosphoribosyl-N-formylglycineamide + ADP
EC# 2.1.2.210-formyl-THF + 5-phospho-ribosyl-glycineamide = THF + 5'-phosphoribosyl-N-formylglycineamide
EC# 2.1.2.310-formyl-THF + AICAR = THF + phosphoribosyl-formamido-carboxamide
EC# 2.1.2.11H2O + 2-keto-isovalerate + 5,10-methylene-THF = 2-dehydropantoate + THF
EC# 2.1.3.2L-aspartate + carbamoyl-phosphate = carbamoyl-L-aspartate + phosphate
EC# 2.1.3.3L-ornithine + carbamoyl-phosphate = citrulline + phosphate
EC# 2.2.1.1ribose-5-phosphate + xylulose-5-phosphate = sedoheptulose-7-phosphate + glyceraldehyde-3-phosphate
EC# 2.2.1.1fructose-6-phosphate + glyceraldehyde-3-phosphate = xylulose-5-phosphate + erythrose-4-phosphate
EC# 2.2.1.2glyceraldehyde-3-phosphate + sedoheptulose-7-phosphate = fructose-6-phosphate + erythrose-4-phosphate
EC# 2.3.1.118an N-hydroxyarylamine + an N-hydroxyarylamine + acetyl-CoA = an N-acetoxyarylamine + an N-acetoxyarylamine + Coenzyme A
EC# 2.3.1.92 acetyl-CoA = acetoacetyl-CoA + Coenzyme A
EC# 2.3.1.31homoserine + acetyl-CoA = O-Acetyl-L-homoserine + Coenzyme A
EC# 2.3.1.12Coenzyme A + S-acetyldihydrolipoamide = acetyl-CoA + dihydrolipoamide
EC# 2.3.1.47L-alanine + 6-carboxyhexanoyl-CoA = CO2 + Coenzyme A + 8-amino-7-oxononanoate
EC# 2.3.1.-propionyl-CoA + phosphate = propionyl-P + Coenzyme A
EC# 2.3.1.35L-glutamate + N-α-acetylornithine = N-acetyl-L-glutamate + L-ornithine
EC# 2.3.1.30L-serine + acetyl-CoA = O-acetyl-L-serine + Coenzyme A
EC# 2.3.1.852N NADPH + N malonyl-CoA + acetyl-CoA = 2N NADP + N CO2 + (N+1) COA + A LONG-CHAIN FATTY ACID
EC# 2.3.1.19phosphate + butyryl-CoA = butyryl phosphate + Coenzyme A
EC# 2.3.1.8phosphate + acetyl-CoA = acetylphosphate + Coenzyme A
EC# 2.3.1.16Coenzyme A + 3-ketoacyl-CoA = acetyl-CoA + acyl-CoA
EC# 2.3.1.74coumaroyl-CoA + 3 malonyl-CoA = naringenin chalcone + 3 CO2 + 4 Coenzyme A
EC# 2.3.1.1L-glutamate + acetyl-CoA = N-acetyl-L-glutamate + Coenzyme A
EC# 2.3.1.162-methylaceto-acetyl-CoA + Coenzyme A = propionyl-CoA + acetyl-CoA
EC# 2.3.1.117H2O + tetrahydrodipicolinate + succinyl-CoA = N-succinyl-2-amino-6-ketopimelate + Coenzyme A
EC# 2.3.1.54pyruvate + Coenzyme A = formate + acetyl-CoA
EC# 2.3.1.-TDP-D-fucosamine + acetyl-CoA = TDP-4-acetamido-4,6-dideoxy-D-galactose + Coenzyme A
EC# 2.3.1.-2-oxobutanoate + Coenzyme A = propionyl-CoA + formate
EC# 2.3.1.292-amino-3-oxobutanoate + Coenzyme A = L-glycine + acetyl-CoA
EC# 2.3.1.46homoserine + succinyl-CoA = O-succinyl-L-homoserine + Coenzyme A
EC# 2.3.1.201,2-diacylglycerol + acyl-CoA = triacylglycerol + Coenzyme A
EC# 2.3.1.1112N NADPH + N L-methylmalonyl-CoA + acyl-CoA = NADP + CO2 + Coenzyme A + Multi-methyl-branched acyl-CoA
EC# 2.4.1.91kaempferol + UDP-D-glucose = kaempferol-3-glucoside + UDP
EC# 2.4.1.15UDP-D-glucose + glucose-6-phosphate = UDP + α,α-trehalose 6-phosphate
EC# 2.4.1.-undecaprenyl phosphate + UDP-N-acetyl-D-glucosamine = UMP + undecaprenyl-N-acetyl-α-D-glucosaminyl-pyrophosphate
EC# 2.4.1.181,4-α-D-glucan = 6-α-D-(1,4-α-D-glucano)-glucan
EC# 2.4.1.25maltotetraose + β-D-glucose = maltotriose + maltose
EC# 2.4.1.-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptane- D-alanyl-D-alanine-diphosphoundecaprenol + UDP-N-acetyl-D-glucosamine = undecaprenyl-pyrophosphoryl-MurNAc-(pentapeptide)-N-acetylglucosamine + UDP
EC# 2.4.1.211,4-α-D-glucan + ADP-D-glucose = ADP + 1,4-α-D-glucan
EC# 2.4.1.8phosphate + maltose = β-D-Glucose 1-phosphate + β-D-glucose
EC# 2.4.1.-C55-PP-GlcNAc-ManNAcA + TDP-4-acetamido-4,6-dideoxy-D-galactose = C55-PP-GlcNAc-ManNAcA-Fuc4NAc + dTDP
EC# 2.4.1.-UDP-N-acetyl-D-mannosaminuronic-acid + undecaprenyl-N-acetyl-α-D-glucosaminyl-pyrophosphate = C55-PP-GlcNAc-ManNAcA + UDP
EC# 2.4.2.8pyrophosphate + IMP = PRPP + hypoxanthine
EC# 2.4.2.4phosphate + thymidine = deoxy-ribose-1-phosphate + thymine
EC# 2.4.2.9PRPP + uracil = pyrophosphate + UMP
EC# 2.4.2.1a purine nucleoside + phosphate + a purine nucleoside = a purine base + ribose-1-phosphate + purine
EC# 2.4.2.19PRPP + quinolinate = CO2 + pyrophosphate + nicotinate nucleotide
EC# 2.4.2.14L-glutamine + PRPP + H2O = 5-phosphoribosylamine + pyrophosphate + L-glutamate
EC# 2.4.2.17ATP + PRPP = phosphoribosyl-ATP + pyrophosphate
EC# 2.4.2.18anthranilate + PRPP = N-(5'-phosphoribosyl)-anthranilate + pyrophosphate
EC# 2.4.2.7PRPP + adenine = pyrophosphate + AMP
EC# 2.4.2.21nicotinate nucleotide + dimethylbenzimidazole = niacine + α-ribazole-5'-P
EC# 2.4.2.3phosphate + uridine = ribose-1-phosphate + uracil
EC# 2.4.2.10PRPP + orotate = orotidine-5'-phosphate + pyrophosphate
EC# 2.4.2.-phosphoribulosylformimino-AICAR-P + L-glutamine = D-erythro-imidazole-glycerol-phosphate + AICAR + L-glutamate
EC# 2.5.1.15p-aminobenzoate + 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate = 7,8-dihydropteroate + pyrophosphate
EC# 2.5.1.1dimethylallyl-pyrophosphate + Δ3-isopentenyl-PP = pyrophosphate + geranyl-PP
EC# 2.5.1.10geranyl-PP + Δ3-isopentenyl-PP = pyrophosphate + trans, trans-farnesyl diphosphate
EC# 2.5.1.29Δ3-isopentenyl-PP + trans, trans-farnesyl diphosphate = geranylgeranyl-PP + pyrophosphate
EC# 2.5.1.19shikimate-3-phosphate + phosphoenolpyruvate = 5-enolpyruvyl-shikimate-3-phosphate + phosphate
EC# 2.5.1.7UDP-N-acetyl-D-glucosamine + phosphoenolpyruvate = UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine + phosphate
EC# 2.5.1.6ATP + L-methionine + H2O = phosphate + pyrophosphate + S-adenosyl-L-methionine
EC# 2.5.1.92 6,7-dimethyl-8-(1-D-ribityl)lumazine = 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine + riboflavin
EC# 2.5.1.16putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine
EC# 2.5.1.-cob(I)yrinic acid a,c-diamide + ATP + H2O = adenosyl-cobyrinic acid a,c-diamide + phosphate + pyrophosphate
EC# 2.5.1.322 geranylgeranyl-PP = Prephytoene diphosphate + pyrophosphate
EC# 2.5.1.-ATP + cobinamide + H2O = phosphate + pyrophosphate + adenosylcobinamide
EC# 2.5.1.17ATP + cob(I)alamin + H2O = phosphate + pyropho