R package PLASQ

Containing methods to find allele- and parent-specific copy numbers from 100K SNP array data


Requires affy and GLAD packages from Bioconductor as well as aws package from CRAN

Download PLASQ package source (UNIX) here

Download PLASQ package for Windows here

A rough outline giving instructions on how to use PLASQ in its most basic form may be found here.

NEW (28/6/06)!!! PLASQ is now available for 10K array data. Thanks to Jacob Zhang of the Van Andel Institute. Download code here and documentation here.

NEW (27/12/20)!!! PLASQ500K now available, for Affymetrix 500K and 250K platform.
Download PLASQ500K package source (UNIX) here

Download PLASQ500K package for Windows here

NEW (02/10/07)!!! Updated PLASQ500K now available (use this version for latest versions of affy package - thanks to Joel Greshock at GlaxoSmithKline)
Download PLASQ500K package source (UNIX) here

Download PLASQ500K package for Windows here

Information about R and use of its packages may be found here